Serialized Form
manager_
BelkaManager manager_
name_
String name_
short_name_
String short_name_
letter_
char letter_
col_
Color col_
name_
String name_
sign_
String sign_
atomic_number_
int atomic_number_
vdw_radius_
double vdw_radius_
coval_radius_
double coval_radius_
col_
Color col_
invitationItem_
JMenuItem invitationItem_
inTextField_
JTextField inTextField_
outTextField_
JTextField outTextField_
previousCompleted_
boolean previousCompleted_
flowLayout_
FlowLayout flowLayout_
MAX_WIDTH_POWER
int MAX_WIDTH_POWER
MAX_HEIGHT_POWER
int MAX_HEIGHT_POWER
MAX_WIDTH
int MAX_WIDTH
MAX_HEIGHT
int MAX_HEIGHT
poolShadeArray_
belka.draw.ShadeArray poolShadeArray_
flagDraw
int flagDraw
molImage_
Image molImage_
imageSource_
MemoryImageSource imageSource_
pixImage_
int[] pixImage_
zDrawn_
int[] zDrawn_
nToClean_
int nToClean_
cleanPix_
int[] cleanPix_
width_
int width_
height_
int height_
center_x_
int center_x_
center_y_
int center_y_
timePixel
long timePixel
timeColor
long timeColor
molArray_
Molecule[] molArray_
rot_
int[] rot_
shift_
int[] shift_
scale_
double scale_
scaleStepRatio_
double scaleStepRatio_
scaleStep_
double scaleStep_
moleculeMI_
JMenuItem moleculeMI_
nmrModelMI_
JMenuItem nmrModelMI_
chainMI_
JMenuItem chainMI_
secStrMI_
JMenuItem secStrMI_
residueMI_
JMenuItem residueMI_
atomMI_
JMenuItem atomMI_
temperatureMI_
JMenuItem temperatureMI_
seChainMI_
JMenuItem seChainMI_
seMolMI_
JMenuItem seMolMI_
resPropMenu
JMenu resPropMenu
propZappoMI_
JMenuItem propZappoMI_
propTaylorMI_
JMenuItem propTaylorMI_
propHydrophMI_
JMenuItem propHydrophMI_
propHelixMI_
JMenuItem propHelixMI_
propSheetMI_
JMenuItem propSheetMI_
propTurnMI_
JMenuItem propTurnMI_
propSurfMI_
JMenuItem propSurfMI_
chooseMenu
JMenu chooseMenu
colorAtomsMI_
JMenuItem colorAtomsMI_
colorBondsMI_
JMenuItem colorBondsMI_
colorBackboneMI_
JMenuItem colorBackboneMI_
colorBackgroundMI_
JMenuItem colorBackgroundMI_
manager_
BelkaManager manager_
wireframeMI_
JMenuItem wireframeMI_
backboneMI_
JMenuItem backboneMI_
traceMI_
JMenuItem traceMI_
sticksMI_
JMenuItem sticksMI_
spacefillMI_
JMenuItem spacefillMI_
ballsticksMI_
JMenuItem ballsticksMI_
ribbonsMI_
JMenuItem ribbonsMI_
strandsMI_
JMenuItem strandsMI_
cartoonsMI_
JMenuItem cartoonsMI_
manager_
BelkaManager manager_
openFileMI_
JMenuItem openFileMI_
openFileURLMI_
JMenuItem openFileURLMI_
openFilePDBMI_
JMenuItem openFilePDBMI_
saveFileMI_
JMenuItem saveFileMI_
openProjectMI_
JMenuItem openProjectMI_
saveProjectMI_
JMenuItem saveProjectMI_
quitMI_
JMenuItem quitMI_
manager_
BelkaManager manager_
selectAllMI_
JMenuItem selectAllMI_
selectAlignedMI_
JMenuItem selectAlignedMI_
rigidsMenu_
JMenu rigidsMenu_
rigidsMI_
JMenuItem[] rigidsMI_
manager_
BelkaManager manager_
L
double[][] L
- Array for internal storage of decomposition.
- internal array storage.
n
int n
- Row and column dimension (square matrix).
- matrix dimension.
isspd
boolean isspd
- Symmetric and positive definite flag.
- is symmetric and positive definite flag.
n
int n
- Row and column dimension (square matrix).
- matrix dimension.
issymmetric
boolean issymmetric
- Symmetry flag.
- internal symmetry flag.
d
double[] d
- Arrays for internal storage of eigenvalues.
- internal storage of eigenvalues.
e
double[] e
- Arrays for internal storage of eigenvalues.
- internal storage of eigenvalues.
V
double[][] V
- Array for internal storage of eigenvectors.
- internal storage of eigenvectors.
H
double[][] H
- Array for internal storage of nonsymmetric Hessenberg form.
- internal storage of nonsymmetric Hessenberg form.
ort
double[] ort
- Working storage for nonsymmetric algorithm.
- working storage for nonsymmetric algorithm.
LU
double[][] LU
- Array for internal storage of decomposition.
- internal array storage.
m
int m
- Row and column dimensions, and pivot sign.
- column dimension.
n
int n
- Row and column dimensions, and pivot sign.
- column dimension.
pivsign
int pivsign
- Row and column dimensions, and pivot sign.
- column dimension.
piv
int[] piv
- Internal storage of pivot vector.
- pivot vector.
A
double[][] A
- Array for internal storage of elements.
- internal array storage.
m
int m
- Row and column dimensions.
- row dimension.
n
int n
- Row and column dimensions.
- row dimension.
QR
double[][] QR
- Array for internal storage of decomposition.
- internal array storage.
m
int m
- Row and column dimensions.
- column dimension.
n
int n
- Row and column dimensions.
- column dimension.
Rdiag
double[] Rdiag
- Array for internal storage of diagonal of R.
- diagonal of R.
U
double[][] U
- Arrays for internal storage of U and V.
- internal storage of U.
V
double[][] V
- Arrays for internal storage of U and V.
- internal storage of U.
s
double[] s
- Array for internal storage of singular values.
- internal storage of singular values.
m
int m
- Row and column dimensions.
- row dimension.
n
int n
- Row and column dimensions.
- row dimension.