Serialized Form


Package <Unnamed>

Class BelkaApplet extends JApplet implements Serializable

Serialized Fields

manager_

BelkaManager manager_

Package belka.chem

Class belka.chem.Compound extends Object implements Serializable

Serialized Fields

name_

String name_

short_name_

String short_name_

letter_

char letter_

col_

Color col_

Class belka.chem.Element extends Object implements Serializable

Serialized Fields

name_

String name_

sign_

String sign_

atomic_number_

int atomic_number_

vdw_radius_

double vdw_radius_

coval_radius_

double coval_radius_

col_

Color col_

Package belka.draw

Class belka.draw.InOutPanel extends JPanel implements Serializable

Serialized Fields

invitationItem_

JMenuItem invitationItem_

inTextField_

JTextField inTextField_

outTextField_

JTextField outTextField_

previousCompleted_

boolean previousCompleted_

flowLayout_

FlowLayout flowLayout_

Class belka.draw.MolPanel extends JPanel implements Serializable

Serialized Fields

MAX_WIDTH_POWER

int MAX_WIDTH_POWER

MAX_HEIGHT_POWER

int MAX_HEIGHT_POWER

MAX_WIDTH

int MAX_WIDTH

MAX_HEIGHT

int MAX_HEIGHT

poolShadeArray_

belka.draw.ShadeArray poolShadeArray_

flagDraw

int flagDraw

molImage_

Image molImage_

imageSource_

MemoryImageSource imageSource_

pixImage_

int[] pixImage_

zDrawn_

int[] zDrawn_

nToClean_

int nToClean_

cleanPix_

int[] cleanPix_

width_

int width_

height_

int height_

center_x_

int center_x_

center_y_

int center_y_

timePixel

long timePixel

timeColor

long timeColor

molArray_

Molecule[] molArray_

rot_

int[] rot_

shift_

int[] shift_

scale_

double scale_

scaleStepRatio_

double scaleStepRatio_

scaleStep_

double scaleStep_

Package belka.menu

Class belka.menu.MenuColor extends JMenu implements Serializable

Serialized Fields

moleculeMI_

JMenuItem moleculeMI_

nmrModelMI_

JMenuItem nmrModelMI_

chainMI_

JMenuItem chainMI_

secStrMI_

JMenuItem secStrMI_

residueMI_

JMenuItem residueMI_

atomMI_

JMenuItem atomMI_

temperatureMI_

JMenuItem temperatureMI_

seChainMI_

JMenuItem seChainMI_

seMolMI_

JMenuItem seMolMI_

resPropMenu

JMenu resPropMenu

propZappoMI_

JMenuItem propZappoMI_

propTaylorMI_

JMenuItem propTaylorMI_

propHydrophMI_

JMenuItem propHydrophMI_

propHelixMI_

JMenuItem propHelixMI_

propSheetMI_

JMenuItem propSheetMI_

propTurnMI_

JMenuItem propTurnMI_

propSurfMI_

JMenuItem propSurfMI_

chooseMenu

JMenu chooseMenu

colorAtomsMI_

JMenuItem colorAtomsMI_

colorBondsMI_

JMenuItem colorBondsMI_

colorBackboneMI_

JMenuItem colorBackboneMI_

colorBackgroundMI_

JMenuItem colorBackgroundMI_

manager_

BelkaManager manager_

Class belka.menu.MenuDisplay extends JMenu implements Serializable

Serialized Fields

wireframeMI_

JMenuItem wireframeMI_

backboneMI_

JMenuItem backboneMI_

traceMI_

JMenuItem traceMI_

sticksMI_

JMenuItem sticksMI_

spacefillMI_

JMenuItem spacefillMI_

ballsticksMI_

JMenuItem ballsticksMI_

ribbonsMI_

JMenuItem ribbonsMI_

strandsMI_

JMenuItem strandsMI_

cartoonsMI_

JMenuItem cartoonsMI_

manager_

BelkaManager manager_

Class belka.menu.MenuFile extends JMenu implements Serializable

Serialized Fields

openFileMI_

JMenuItem openFileMI_

openFileURLMI_

JMenuItem openFileURLMI_

openFilePDBMI_

JMenuItem openFilePDBMI_

saveFileMI_

JMenuItem saveFileMI_

openProjectMI_

JMenuItem openProjectMI_

saveProjectMI_

JMenuItem saveProjectMI_

quitMI_

JMenuItem quitMI_

manager_

BelkaManager manager_

Class belka.menu.MenuSelect extends JMenu implements Serializable

Serialized Fields

selectAllMI_

JMenuItem selectAllMI_

selectAlignedMI_

JMenuItem selectAlignedMI_

rigidsMenu_

JMenu rigidsMenu_

rigidsMI_

JMenuItem[] rigidsMI_

manager_

BelkaManager manager_

Package belka.mol

Class belka.mol.Assembly extends Object implements Serializable

Class belka.mol.Atom extends Object implements Serializable

Class belka.mol.Bond extends Object implements Serializable

Class belka.mol.Chain extends Object implements Serializable

Class belka.mol.Molecule extends belka.mol.Transformable implements Serializable


Package Jama

Class Jama.CholeskyDecomposition extends Object implements Serializable

Serialized Fields

L

double[][] L
Array for internal storage of decomposition.

internal array storage.

n

int n
Row and column dimension (square matrix).

matrix dimension.

isspd

boolean isspd
Symmetric and positive definite flag.

is symmetric and positive definite flag.

Class Jama.EigenvalueDecomposition extends Object implements Serializable

Serialized Fields

n

int n
Row and column dimension (square matrix).

matrix dimension.

issymmetric

boolean issymmetric
Symmetry flag.

internal symmetry flag.

d

double[] d
Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

e

double[] e
Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

V

double[][] V
Array for internal storage of eigenvectors.

internal storage of eigenvectors.

H

double[][] H
Array for internal storage of nonsymmetric Hessenberg form.

internal storage of nonsymmetric Hessenberg form.

ort

double[] ort
Working storage for nonsymmetric algorithm.

working storage for nonsymmetric algorithm.

Class Jama.LUDecomposition extends Object implements Serializable

Serialized Fields

LU

double[][] LU
Array for internal storage of decomposition.

internal array storage.

m

int m
Row and column dimensions, and pivot sign.

column dimension.

n

int n
Row and column dimensions, and pivot sign.

column dimension.

pivsign

int pivsign
Row and column dimensions, and pivot sign.

column dimension.

piv

int[] piv
Internal storage of pivot vector.

pivot vector.

Class Jama.Matrix extends Object implements Serializable

Serialized Fields

A

double[][] A
Array for internal storage of elements.

internal array storage.

m

int m
Row and column dimensions.

row dimension.

n

int n
Row and column dimensions.

row dimension.

Class Jama.QRDecomposition extends Object implements Serializable

Serialized Fields

QR

double[][] QR
Array for internal storage of decomposition.

internal array storage.

m

int m
Row and column dimensions.

column dimension.

n

int n
Row and column dimensions.

column dimension.

Rdiag

double[] Rdiag
Array for internal storage of diagonal of R.

diagonal of R.

Class Jama.SingularValueDecomposition extends Object implements Serializable

Serialized Fields

U

double[][] U
Arrays for internal storage of U and V.

internal storage of U.

V

double[][] V
Arrays for internal storage of U and V.

internal storage of U.

s

double[] s
Array for internal storage of singular values.

internal storage of singular values.

m

int m
Row and column dimensions.

row dimension.

n

int n
Row and column dimensions.

row dimension.