|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectbelka.chem.Compound
public class Compound
Objects of this class represent chemical compounds.
Field Summary | |
---|---|
static Compound |
Adenine
Adenine |
static Compound |
Alanine
Alanine |
static Compound |
Arginine
Arginine |
static Compound |
Asparagine
Asparagine |
static Compound |
Aspartate
Aspartate |
static Compound |
Aspartate_or_Asparagine
Aspartate or asparagine (uncertain result of hydrolysis) |
static Compound |
Cysteine
Cysteine |
static Compound |
Cytosine
Cytosine |
static Compound |
Glutamate
Glutamate |
static Compound |
Glutamate_or_Glutamine
Glutamate or glutamine (uncertain result of hydrolysis) |
static Compound |
Glutamine
Glutamine |
static Compound |
Glycine
Glycine |
static Compound |
Guanine
Guanine |
static Compound |
h2o
|
static Compound |
Histidine
Histidine |
static Compound |
hoh
Water |
static Compound |
Isoleucine
Isoleucine |
static Compound |
Leucine
Leucine |
static Compound |
Leucine_or_Isoleucine
Leucine or isoleucine (uncertain result of mass-spec) |
static Compound |
Lysine
Lysine |
static Compound |
Methionine
Methionine |
static Compound |
Phenylalanine
Phenylalanine |
static Compound |
Proline
Proline |
static Compound |
Pyrrolysine
Pyrrolysine (non-standard) |
static Compound |
Selenocysteine
Selenocysteine (non-standard) |
static Compound |
Selenomethionine
Selenomethionine (non-standard) |
static Compound |
Serine
Serine |
static Compound |
Threonine
Threonine |
static Compound |
Thymine
Thymine |
static Compound |
Tryptophan
Tryptophan |
static Compound |
Tyrosine
Tyrosine |
static Compound |
Uracil
Uracil |
static Compound |
Valine
Valine |
Constructor Summary | |
---|---|
Compound(String short_name)
|
|
Compound(String name,
String short_name,
char letter,
Color col)
|
Method Summary | |
---|---|
Color |
getColor()
Returns compound's color to be used to draw it. |
static Compound |
getCompoundByName(String name)
Returns compound with given name. |
static Compound |
getCompoundByShortName(String short_name)
Returns compound with short (three-letter) name. |
char |
getLetterName()
Returns compound's one letter name, for example 'A' for Alanine. |
String |
getName()
Returns compound's full name, for example "Alanine". |
String |
getShortName()
Returns compound's short name (three-letter), for example "Ala". |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
---|
public static final Compound Alanine
public static final Compound Arginine
public static final Compound Asparagine
public static final Compound Aspartate
public static final Compound Cysteine
public static final Compound Glutamate
public static final Compound Glutamine
public static final Compound Glycine
public static final Compound Histidine
public static final Compound Isoleucine
public static final Compound Leucine
public static final Compound Lysine
public static final Compound Methionine
public static final Compound Selenomethionine
public static final Compound Phenylalanine
public static final Compound Proline
public static final Compound Serine
public static final Compound Threonine
public static final Compound Tyrosine
public static final Compound Tryptophan
public static final Compound Valine
public static final Compound Selenocysteine
public static final Compound Pyrrolysine
public static final Compound Aspartate_or_Asparagine
public static final Compound Leucine_or_Isoleucine
public static final Compound Glutamate_or_Glutamine
public static final Compound Adenine
public static final Compound Cytosine
public static final Compound Guanine
public static final Compound Thymine
public static final Compound Uracil
public static final Compound hoh
public static final Compound h2o
Constructor Detail |
---|
public Compound(String name, String short_name, char letter, Color col)
public Compound(String short_name)
Method Detail |
---|
public String getName()
public String getShortName()
public char getLetterName()
public Color getColor()
public static Compound getCompoundByName(String name)
name
- compounds's name.
public static Compound getCompoundByShortName(String short_name)
short_name
- compounds's short name.
|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |