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java.lang.Objectbelka.geom.RigidFinder
public class RigidFinder
Objects of this class perform separation of a structure into several rigid blocks.
Constructor Summary | |
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RigidFinder()
Object constructor. |
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RigidFinder(Chain[] chains1,
Chain[] chains2)
Object constructor. |
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RigidFinder(Chain chain1,
Chain chain2)
Object constructor. |
Method Summary | |
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int |
findRigids()
Returns number of rigid blocks the structure can be split in. |
int |
findRigids(double deltaDist)
Returns number of rigid blocks the structure can be split in. |
int |
findRigids(double deltaDist,
boolean ref,
boolean clus,
File file)
Returns number of rigid blocks the structure can be split in. |
int |
getNRigids()
Returns number of found rigid blocks. |
double |
getSpentTime()
Returns time in seconds spent on last call to function findRigids(double,boolean,boolean,File) . |
StringBuffer |
print(Chain[] chains1,
Chain[] chains2)
Function prints information about rigid blocks into a string and returns it. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public RigidFinder()
public RigidFinder(Chain chain1, Chain chain2)
public RigidFinder(Chain[] chains1, Chain[] chains2)
Method Detail |
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public int findRigids()
findRigids(double,boolean,boolean,File)
.
public int findRigids(double deltaDist)
findRigids(double,boolean,boolean,File)
.
public int findRigids(double deltaDist, boolean ref, boolean clus, File file)
deltaDist
- maximal allowed deviation of interresidue distance
within rigid body.ref
- flag to specify whether blocks has to be refined.clus
- flag to specify whether clustering of small fragmnet has to
be made.file
- file to save output.
public double getSpentTime()
findRigids(double,boolean,boolean,File)
.
findRigids(double,boolean,boolean,File)
.public StringBuffer print(Chain[] chains1, Chain[] chains2)
chains1
- first set of chains.chains2
- second set of chains.
public int getNRigids()
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